Journal:

Article Title: Human ?-Defensins Inhibit BK Virus Infection by Aggregating Virions and Blocking Binding to Host Cells *

doi: 10.1074/jbc.M805902200

Figure Lengend Snippet: Incubation of HD5 and BKV inhibits viral binding. A, AF488-BKV (m.o.i.: 16) was incubated with H2O(black line) or 50 μg/ml of the indicated defensins (dotted line) in MEM, MEM containing 5% FBS, or PBS at 4 °C for 1 h. Vero cells in suspension were then incubated with the BKV mixture at 4 °C for 1 h and viral binding was evaluated using flow cytometry. Filled histograms represent cells in the absence of AF488-BKV. B, a 1:100 dilution of purified BKV was incubated with H2O or 50 μg/ml HD5 in the indicated media at 4 °C for 1 h. This preparation was 2-fold serially diluted across a U-bottom plate containing PBS. The HA plate was incubated with 0.5% erythrocytes in PBS at 4 °C for 16 h. A representation image of a HA plate is shown. C, Vero cells in suspension were treated with 50 μg/ml HD5 (dotted line) or an equal volume of H2O(bold line) in the indicated solutions at 4 °C for 1 h. Cells were washed and incubated with AF488-BKV (m.o.i. 16), biotintylated-SNA (lectin specific for α(2,6)-linked sialic acid), or biotintylated-MALII (lectin specific for α(2,3)-linked sialic acid) at 4 °C for 1 h. For SNA and MALII samples, cells were washed and incubated with AF488-labeled streptavidin. Fluorescence intensity was measured using flow cytometry. Filled histograms represent unstained cells.

Article Snippet: 16) of purified AF488-BKV in PBS or the lectins: 4 μg/ml biotintylated Maackia amurensis lectin II (MALII) or biotintylated Sambucus nigra lectin (SNA) (Vector Laboratories) in lectin HEPES buffer (10 m m HEPES, 150 m m NaCl, 0.1 m m MgCl 2 , 0.1 m m CaCl 2 , pH 7.2) at 4 °C for 1 h. Lectin binding was followed by washing and incubation of 2 μg/ml streptavidin-labeled Alexa Fluor 488 (Molecular Probes) at 4 °C for 1 h. Cells were washed twice with PBS and fluorescence intensity determined as above.

Techniques: Incubation, Binding Assay, Flow Cytometry, Purification, Labeling, Fluorescence

Journal: bioRxiv

Article Title: Engagement of sialylated glycans with Siglec receptors on myeloid suppressor cells inhibit anti-cancer immunity via CCL2

doi: 10.1101/2023.06.29.547025

Figure Lengend Snippet: (A) MFI of SNA or (B) MALII gated on PB-derived Lin - HLADR low CD33 + CD11b + cells from lung cancer patient and healthy controls. MFI is shown as change to FMO and was determined by flow cytometry. N=8-13 donors with at least N=2 experiments. (C) MALDI-TOF mass spectra (m/z 1200–5000) of N-glycans isolated from CD33 + cells of healthy donor and lung cancer patient derived from fresh blood. The N-glycans were released by PNGaseF and permethylated prior to MALDI-TOF-TOF profiling. Main structures are depicted above the corresponding peaks. Assignments are based on composition and knowledge of biosynthetic pathways. All molecular ions are [M + Na] + . Residues above a bracket have not had their location unequivocally defined. (D) Relative quantification of N-Glycans detected in cancer patient and healthy donor derived CD33 + cells from (C) . N=1 . (E) Fresh blood from B16F10 tumor bearing mice and naïve wildtype mice was collected at day 14 after tumor inoculation and analyzed for SNA gated on (E) CD45 + CD11b + Ly6C + or (F) CD45 + CD11b + Ly6G + cells. MFI is shown as change to FMO. 7-8 mice per group with N=2 experiments . Data are presented as mean. Error bar values represent SD. Two-tailed unpaired Student’s t test was used. *P<0.05, **P<0.01, ***P<0.001, and ****P<0.0001.

Article Snippet: Fluorophore-coupled lectins - PNA-PE (GeneTex) and SNA-FITC (GeneTex) - and biotinylated lectins – MALII (GeneTex) were used at a final concentration of 10 μg/mL.

Techniques: Derivative Assay, Flow Cytometry, Isolation, Quantitative Proteomics, Two Tailed Test

Journal: bioRxiv

Article Title: Engagement of sialylated glycans with Siglec receptors on myeloid suppressor cells inhibit anti-cancer immunity via CCL2

doi: 10.1101/2023.06.29.547025

Figure Lengend Snippet: (A) PNA gated on PB-derived CD45 + Lin - HLADR low CD33 + CD11b + cells from primary lung cancer patient and healthy controls. MFI is shown as a change to FMO and was determined by flow. N=8-12 donors with at least N=2 . (B) Fresh blood from B16F10 tumor-bearing mice and naïve wildtype mice was collected at day 14 after tumor inoculation and analyzed for MALII or (C) PNA gated on CD45 + CD11b + Ly6C + or CD45 + CD11b + Ly6G + cells. MFI is shown as a change to FMO. 5-8 mice per group. Data are presented as mean. Error bar values represent SD. Two-tailed unpaired Student’s t test or multiple unpaired t-tests (B, C) was used. *P<0.05, **P<0.01, ***P<0.001, and ****P<0.0001.

Article Snippet: Fluorophore-coupled lectins - PNA-PE (GeneTex) and SNA-FITC (GeneTex) - and biotinylated lectins – MALII (GeneTex) were used at a final concentration of 10 μg/mL.

Techniques: Derivative Assay, Two Tailed Test

Journal: bioRxiv

Article Title: Engagement of sialylated glycans with Siglec receptors on myeloid suppressor cells inhibit anti-cancer immunity via CCL2

doi: 10.1101/2023.06.29.547025

Figure Lengend Snippet: (A) Experimental setup: SigE ΔLysM and SigE WT littermates were subcutaneously injected with B16F10 or B16F10 cells expressing sialidase (B16F10-sia). Tumor growth and probability of survival were addressed as the main read-out. (B) B16F10 and B16F10-sia cells were stained for SNA, MALII and Sialidase expression to validate the successful generation of stable cell lines. Cell lines were stained before each experiment, representative results are shown. (C) Tumor volume and (D) Kaplan-Meier survival curves from pooled data from 2 independent experiments. N=8-12 mice per group from 2 experiments. Data are presented as mean with error bars presenting SEM. Tumor growth was compared by mixed-effects analysis followed by Bonferroni’s multiple comparisons test. For survival analysis, log-rank test was used followed by Šidák correction for multiple comparisons. *P<0.05, **P<0.01, ***P<0.001, and ****P<0.0001.

Article Snippet: Fluorophore-coupled lectins - PNA-PE (GeneTex) and SNA-FITC (GeneTex) - and biotinylated lectins – MALII (GeneTex) were used at a final concentration of 10 μg/mL.

Techniques: Injection, Expressing, Staining, Stable Transfection

Journal: bioRxiv

Article Title: Engagement of sialylated glycans with Siglec receptors on myeloid suppressor cells inhibit anti-cancer immunity via CCL2

doi: 10.1101/2023.06.29.547025

Figure Lengend Snippet: (A) Identification of E:T ratios to validate the suppressive capacity of CD33 + cells against CD8 + cells. Suppressive myeloid cells were generated by co-culture with A549 (pink), HeLa (green) or without cancer cells (black). Dotted lines indicate the proliferation of T cells alone with/without stimulation by IL-2, aCD3/28 microbeads. N=4 donors of N=2 experiments . (B) A549, A549 expressing sialidase (A549-sia) and A549 GNE KO cells were stained for SNA, MALII and PNA to validate the successful generation of stable cell lines. Cell lines were stained before each experiment, representative results are shown. (C) MALII staining was performed on suppressive CD33 + cells on day 7 of the experiment. N=7 donors of N=4 experiments. (D) Percentage of proliferating CD8 + cells upon co-culture (1:10 ratio) with indicated suppressive CD33 + cells. Suppressive myeloid cells were generated using HeLa or HeLa-expressing sialidase (HeLa-sia) cancer cell lines. N=3-8 donors (E) Gene ontology enrichment analysis of the top 10 up- and downregulated gene sets found in suppressive CD33 + cells generated with A549-sia compared to parental A549 cell line. (F) PNA staining was assessed on suppressive CD33 + cells after pretreatment with sialidase on day 7 of the experiment. N=9 donors of N=5 experiments. (G) Proliferating CD8 + cells in percentage co-cultured with suppressive CD33 + cells generated by A549 co-culture in a ratio of 1:5. CD33 + cells were used immediately or were pretreated with indicated sialidases. N=3 donors of N=2 experiments. (H) Percentage of proliferating CD8 + cells upon co-culture (1:10 ratio) with suppressive CD33 + cells generated by HeLa co-culture. CD33 + cells were used immediately or were pretreated with sialidase. Data are presented as mean and error bar values represent SD. Paired t-test was used. *P<0.05, **P<0.01, ***P<0.001, and ****P<0.0001.

Article Snippet: Fluorophore-coupled lectins - PNA-PE (GeneTex) and SNA-FITC (GeneTex) - and biotinylated lectins – MALII (GeneTex) were used at a final concentration of 10 μg/mL.

Techniques: Generated, Co-Culture Assay, Expressing, Staining, Stable Transfection, Cell Culture